Potent proteasome inhibitors derived from the unnatural cis-cyclopropane isomer of Belactosin A: synthesis, biological activity, and mode of action

J Med Chem. 2013 May 9;56(9):3689-700. doi: 10.1021/jm4002296. Epub 2013 Apr 22.

Abstract

The natural product belactosin A (1) with a trans-cyclopropane structure is a useful prototype compound for developing potent proteasome (core particle, CP) inhibitors. To date, 1 and its analogues are the only CP ligands that bind to both the nonprimed S1 pocket as well as the primed substrate binding channel; however, these molecules harbor a high IC50 value of more than 1 μM. We have performed structure-activity relationship studies, thereby elucidating unnatural cis-cyclopropane derivatives of 1 that exhibit high potency to primarily block the chymotrypsin-like active site of the human constitutive (cCP) and immunoproteasome (iCP). The most active compound 3e reversibly inhibits cCP and iCP similarly with an IC50 of 5.7 nM. X-ray crystallographic analysis of the yeast proteasome in complex with 3e revealed that the ligand is accommodated predominantly into the primed substrate binding channel and covalently binds to the active site threonine residue via its β-lactone ring-opening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Proliferation / drug effects
  • Chemistry Techniques, Synthetic
  • Crystallography, X-Ray
  • Cyclopropanes / chemistry*
  • Drug Stability
  • HCT116 Cells
  • Humans
  • Intercellular Signaling Peptides and Proteins
  • Isomerism
  • Models, Molecular
  • Peptides / chemical synthesis
  • Peptides / chemistry*
  • Proteasome Endopeptidase Complex / metabolism*
  • Proteasome Inhibitors / chemical synthesis
  • Proteasome Inhibitors / chemistry*
  • Proteasome Inhibitors / pharmacology*
  • Protein Conformation
  • Water / chemistry

Substances

  • Cyclopropanes
  • Intercellular Signaling Peptides and Proteins
  • Peptides
  • Proteasome Inhibitors
  • belactosin A
  • Water
  • cyclopropane
  • Proteasome Endopeptidase Complex